Doktoratskolleg MEIBio - Molecular and Elemental Imaging in Bioscience
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Publikationen

Publikationen

(1) Bilo, F., Borgese, L., Prost, J., Rauwolf, M., Turyanskaya, A., Wobrauschek, P., Kregsamer, P., Streli, C., Pazzaglia, U., and Depero, L. E. (2015) Atomic layer deposition to prevent metal transfer from implants: An X-ray fluorescence study. Appl. Surf. Sci. 359, 215–220.

(2) Turyanskaya, A., Rauwolf, M., Grünewald, T., Meischel, M., Stanzl-Tschegg, S., Löffler, J., Wobrauschek, P., Weinberg, A., Lichtenegger, H., and Streli, C. (2016) µXRF Elemental Mapping of Bioresorbable Magnesium-Based Implants in Bone. Materials (Basel). 9, 811.

(3) Borgese, L., Bilo, F., Zacco, A., Bontempi, E., Pasquali, M., Federici, S., Prost, J., Rauwolf, M., Turyanskaya, A., Streli, C., Kregsamer, P., Wobrauschek, P., and Depero, L. E. (2016) (Invited) ALD to Prevent Metal Transfer from Implants. ECS Trans. 75, 167–175.

(4) Denk, C., Svatunek, D., Filip, T., Wanek, T., Lumpi, D., Fröhlich, J., Kuntner, C., and Mikula, H. (2014) Development of a 18 F-Labeled Tetrazine with Favorable Pharmacokinetics for Bioorthogonal PET Imaging. Angew. Chem. Int. Ed. 53, 9655–9659.

(5) Denk, C., Svatunek, D., Mairinger, S., Stanek, J., Filip, T., Matscheko, D., Kuntner, C., Wanek, T., and Mikula, H. (2016) Design, Synthesis, and Evaluation of a Low-Molecular-Weight 11C-Labeled Tetrazine for Pretargeted PET Imaging Applying Bioorthogonal in Vivo Click Chemistry. Bioconjug. Chem. 27, 1707–1712.

(6) Svatunek, D., Denk, C., Rosecker, V., Sohr, B., Hametner, C., Allmaier, G., Fröhlich, J., and Mikula, H. (2016) Efficient low-cost preparation of trans-cyclooctenes using a simplified flow setup for photoisomerization. Monatshefte für Chemie - Chem. Mon. 147, 579–585.

(7) Wang, M., Svatunek, D., Rohlfing, K., Liu, Y., Wang, H., Giglio, B., Yuan, H., Wu, Z., Li, Z., and Fox, J. (2016) Conformationally Strained trans- Cyclooctene (sTCO) Enables the Rapid Construction of 18 F-PET Probes via Tetrazine Ligation. Theranostics 6, 887–895.

(8) Bonta, M., Lohninger, H., Laszlo, V., Hegedus, B., and Limbeck, A. (2014) Quantitative LA-ICP-MS imaging of platinum in chemotherapy treated human malignant pleural mesothelioma samples using printed patterns as standard. J. Anal. At. Spectrom. 29, 2159–2167.

(9) Gludovacz, E., Maresch, D., Bonta, M., Szöllösi, H., Furtmüller, P. G., Weik, R., Altmann, F., Limbeck, A., Borth, N., Jilma, B., and Boehm, T. (2016) Characterization of recombinant human diamine oxidase (rhDAO) produced in Chinese Hamster Ovary (CHO) cells. J. Biotechnol. 227, 120–130.

(10) Bonta, M., Gonzalez, J. J., Quarles, C. D., Russo, R. E., Hegedus, B., and Limbeck, A. (2016) Elemental mapping of biological samples by the combined use of LIBS and LA-ICP-MS. J. Anal. At. Spectrom. 31, 252–258.

(11) Bonta, M., Hegedus, B., and Limbeck, A. (2016) Application of dried-droplets deposited on pre-cut filter paper disks for quantitative LA-ICP-MS imaging of biologically relevant minor and trace elements in tissue samples. Anal. Chim. Acta 908, 54–62.

(12) Limbeck, A., Galler, P., Bonta, M., Bauer, G., Nischkauer, W., and Vanhaecke, F. (2015) Recent advances in quantitative LA-ICP-MS analysis: challenges and solutions in the life sciences and environmental chemistry. Anal. Bioanal. Chem. 407, 6593–6617.

(13) Bonta, M., Limbeck, A., Quarles Jr, C. D., Oropeza, D., Russo, R. E., and Gonzalez, J. J. (2015) A metric for evaluation of the image quality of chemical maps derived from LA-ICP-MS experiments. J. Anal. At. Spectrom. 30, 1809–1815.

(14) Bonta, M., Lohninger, H., Marchetti-Deschmann, M., and Limbeck, A. (2014) Application of gold thin-films for internal standardization in LA-ICP-MS imaging experiments. Analyst 139, 1521.

(15) Shariatgorji, M., Nilsson, A., Bonta, M., Gan, J., Marklund, N., Clausen, F., Källback, P., Loden, H., Limbeck, A., and Andrén, P. E. (2016) Direct imaging of elemental distributions in tissue sections by laser ablation mass spectrometry. Methods 104, 86–92.

(16) Fröhlich, S. M., Eilenberg, M., Svirkova, A., Grasl, C., Liska, R., Bergmeister, H., and Marchetti-Deschmann, M. (2015) Mass spectrometric imaging of in vivo protein and lipid adsorption on biodegradable vascular replacement systems. Analyst 140, 6089–6099.

(17) Baumgartner, B., Svirkova, A., Bintinger, J., Hametner, C., Marchetti-Deschmann, M., and Unterlass, M. M. (2017) Green and highly efficient synthesis of perylene and naphthalene bisimides in nothing but water. Chem. Commun.

(18) Ramoni, J., and Seiboth, B. (2016) 6 Degradation of Plant Cell Wall Polymers by Fungi, in Environmental and Microbial Relationships, pp 127–148. Springer International Publishing, Cham.

(19) Ramoni, J., Seidl-Seiboth, V., Bischof, R. H., and Seiboth, B. (2016) Gene Expression Systems in Industrial Ascomycetes: Advancements and Applications, pp 3–22.

(20) Bischof, R. H., Ramoni, J., and Seiboth, B. (2016) Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei. Microb. Cell Fact. 15, 106.

(21) Eibinger, M., Sigl, K., Sattelkow, J., Ganner, T., Ramoni, J., Seiboth, B., Plank, H., and Nidetzky, B. (2016) Functional characterization of the native swollenin from Trichoderma reesei: study of its possible role as C1 factor of enzymatic lignocellulose conversion. Biotechnol. Biofuels 9, 178.

(22) Ramer, G., Balbekova, A., Schwaighofer, A., and Lendl, B. (2015) Method for Time-Resolved Monitoring of a Solid State Biological Film Using Photothermal Infrared Nanoscopy on the Example of Poly- l -lysine. Anal. Chem. 87, 4415–4420.

(23) Becker, K., Hahn, C. M., Saghafi, S., Jährling, N., Wanis, M., and Dodt, H.-U. (2014) Reduction of Photo Bleaching and Long Term Archiving of Chemically Cleared GFP-Expressing Mouse Brains. PLoS One (Harms, C., Ed.) 9, e114149.

(24) Bischof, R. H., Horejs, J., Metz, B., Gamauf, C., Kubicek, C. P., and Seiboth, B. (2015) l-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei. Microb. Cell Fact. 14, 120.

(25) Lichius, A., Bidard, F., Buchholz, F., Le Crom, S., Martin, J., Schackwitz, W., Austerlitz, T., Grigoriev, I. V, Baker, S. E., Margeot, A., Seiboth, B., and Kubicek, C. P. (2015) Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics 16, 326.

(26) Magni, F., Lalowski, M., Mainini, V., Marchetti-Deschmann, M., Chinello, C., Urbani, A., and Baumann, M. (2013) Proteomics imaging and the kidney. J. Nephrol. 26, 430–436.

(27) Fröhlich, S. M., Archodoulaki, V.-M., Allmaier, G., and Marchetti-Deschmann, M. (2014) MALDI-TOF Mass Spectrometry Imaging Reveals Molecular Level Changes in Ultrahigh Molecular Weight Polyethylene Joint Implants in Correlation with Lipid Adsorption. Anal. Chem. 86, 9723–9732.

(28) Fröhlich, S. M., Dorrer, V., Archodoulaki, V.-M., Allmaier, G., and Marchetti-Deschmann, M. (2014) Synovial fluid protein adsorption on polymer-based artificial hip joint material investigated by MALDI-TOF mass spectrometry imaging. EuPA Open Proteomics 4, 70–80.

(29) Bergmeister, H., Seyidova, N., Schreiber, C., Strobl, M., Grasl, C., Walter, I., Messner, B., Baudis, S., Fröhlich, S., Marchetti-Deschmann, M., Griesser, M., di Franco, M., Krssak, M., Liska, R., and Schima, H. (2015) Biodegradable, thermoplastic polyurethane grafts for small diameter vascular replacements. Acta Biomater. 11, 104–113.

(30) Holzlechner, M., Reitschmidt, S., Gruber, S., Zeilinger, S., and Marchetti-Deschmann, M. (2016) Visualizing fungal metabolites during mycoparasitic interaction by MALDI mass spectrometry imaging. Proteomics 16, 1742–1746.

(31) Holzlechner, M., Strasser, K., Zareva, E., Steinhäuser, L., Birnleitner, H., Beer, A., Bergmann, M., Oehler, R., and Marchetti-Deschmann, M. (2016) In Situ Characterization of Tissue-Resident Immune Cells by MALDI Mass Spectrometry Imaging. J. Proteome Res. acs.jproteome.6b00610.

Poster und Vorträge

      2013

  1. Bonta M, Lohninger H (2013) A comparison of internal standards in LA-ICP-MS imaging experiments on tissue sections. Met. 2013 - Abstr.
  2. Bonta M, Lohninger H, Limbeck A (2013) Internal standards for LA-ICP-MS imaging experiments on biological samples – method development, evaluation and application. B. Abstr. 

      2014

  1. Fröhlich SM, Bergmeister H, Liska R, Marchetti-Deschmann M (2014) Protein and lipid adsorption on vascular replacement systems studied by mass spectrometry imaging.
  2. Marchetti-Deschmann M, McLean JA, Mills C (2014) MS Innovations in Translational Medicine. www.waters.com/waters/library.htm.
  3. Bonta M, Hegedus B, Lohninger H (2014) Quantitative LA-ICP-MS imaging of platinum in tissue samples. B. Abstr.
  4. Bonta M, Nischkauer W (2014) Analysis of trace and bulk elements in biological samples using a splitstream laser-ablation system with simultaneous ICP-OES and ICP-MS detection. Final Progr. B. Abstr.
  5. Fröhlich SM, Kerjaschki D, Allmaier G, Marchetti-Deschmann M (2014) Tumor microheterogeneities – current omics approaches and future perspectives. B. Abstr.
  6. Ramer G, Balbekova A, Lendl B (2014) Resonant Photoexpansion Infrared Nanoscopy - towards robust and time-resolved measurements. In: Final Progr. B. Abstr. SCIX 2014, Reno, Nevada, USA, p 173
  7. Ramoni J, Herold S, Kubicek CP (2014) A genome wide analysis of xylanases in Trichoderma reesei.
  8. Bonta M, Hegedus B, Lohninger J, Limbeck A (2014) A novel approach for quantitative LA-ICP-MS imaging experiments on biological samples. 2014 Winter Conf. Progr. Abstr.
  9. Balbekova A, Ramer G, Lendl B (2014) Monitoring of dynamic changes in poly-L-lysine thin films by time resolved photothermal infrared nanoscopy.
  10. Fröhlich SM, Schachner H, Kerjaschki D, et al. (2014) Differentiating primary mamma carcinoma tumors and metastasis by MALDI-TOF-MS imaging and intact cell mass spectrometry. B. Abstr.
  11. Balbekova A, Ramer G, Lendl B (2014) Toward monitoring of dynamic biochemical systems by the time resolved photothermal infrared nanoscopy. In: Final Progr. B. Abstr. SCIX 2014, Reno, Nevada, USA, p 143
  12. Fröhlich SM, Strobl MS, Bergmeister H, et al. (2014) In vivo protein and lipid adsorption on vascular replacement systems studied by mass spectrometry imaging. Abstractbook
  13. Denk C, Svatunek D, Filip T, et al. (2014) Development and Evaluation of Radiolabeled 1,2,4,5-Tetrazines: Tools for Pretargeted PET Imaging. World Mol. Imaging Congr. 2014
  14. Ghassemi S, Lichius A, Seiboth B, Seidl-Seiboth V (2014) Nuclear transport and cellulase Production in Trichoderma reesei.
  15. Ramer G, Balbekova A, Lendl B (2014) Time Resolved Photothermal Expansion Infrared Nanoscopy. In: B. Abstr. CEITEC Annu. Conf. "Frontiers Mater. Life Sci. CEITEC Annual Conference, Brno, Czech Republic, p 41

      2015

  1. Bonta M, Lohninger H (2013) A comparison of internal standards in LA-ICP-MS imaging experiments on tissue sections. Met. 2013 - Abstr.
  2. Bonta M, Lohninger H, Limbeck A (2013) Internal standards for LA-ICP-MS imaging experiments on biological samples – method development, evaluation and application. B. Abstr.
  3. Fröhlich SM, Bergmeister H, Liska R, Marchetti-Deschmann M (2014) Protein and lipid adsorption on vascular replacement systems studied by mass spectrometry imaging.
  4. Marchetti-Deschmann M, McLean JA, Mills C (2014) MS Innovations in Translational Medicine. www.waters.com/waters/library.htm.
  5. Bonta M, Hegedus B, Lohninger H (2014) Quantitative LA-ICP-MS imaging of platinum in tissue samples. B. Abstr.
  6. Bonta M, Nischkauer W (2014) Analysis of trace and bulk elements in biological samples using a splitstream laser-ablation system with simultaneous ICP-OES and ICP-MS detection. Final Progr. B. Abstr.
  7. Fröhlich SM, Kerjaschki D, Allmaier G, Marchetti-Deschmann M (2014) Tumor microheterogeneities – current omics approaches and future perspectives. B. Abstr.
  8. Ramer G, Balbekova A, Lendl B (2014) Resonant Photoexpansion Infrared Nanoscopy - towards robust and time-resolved measurements. In: Final Progr. B. Abstr. SCIX 2014, Reno, Nevada, USA, p 173
  9. Ramoni J, Herold S, Kubicek CP (2014) A genome wide analysis of xylanases in Trichoderma reesei.
  10. Bonta M, Hegedus B, Lohninger J, Limbeck A (2014) A novel approach for quantitative LA-ICP-MS imaging experiments on biological samples. 2014 Winter Conf. Progr. Abstr.
  11. Balbekova A, Ramer G, Lendl B (2014) Monitoring of dynamic changes in poly-L-lysine thin films by time resolved photothermal infrared nanoscopy.
  12. Fröhlich SM, Schachner H, Kerjaschki D, et al. (2014) Differentiating primary mamma carcinoma tumors and metastasis by MALDI-TOF-MS imaging and intact cell mass spectrometry. B. Abstr.
  13. Balbekova A, Ramer G, Lendl B (2014) Toward monitoring of dynamic biochemical systems by the time resolved photothermal infrared nanoscopy. In: Final Progr. B. Abstr. SCIX 2014, Reno, Nevada, USA, p 143
  14. Fröhlich SM, Strobl MS, Bergmeister H, et al. (2014) In vivo protein and lipid adsorption on vascular replacement systems studied by mass spectrometry imaging. Abstractbook
  15. Denk C, Svatunek D, Filip T, et al. (2014) Development and Evaluation of Radiolabeled 1,2,4,5-Tetrazines: Tools for Pretargeted PET Imaging. World Mol. Imaging Congr. 2014
  16. Ghassemi S, Lichius A, Seiboth B, Seidl-Seiboth V (2014) Nuclear transport and cellulase Production in Trichoderma reesei.
  17. Ramer G, Balbekova A, Lendl B (2014) Time Resolved Photothermal Expansion Infrared Nanoscopy. In: B. Abstr. CEITEC Annu. Conf. "Frontiers Mater. Life Sci. CEITEC Annual Conference, Brno, Czech Republic, p 41
  18. Ramoni J, Marchetti-Deschmann M, Seidl-Seiboth V, Seiboth B (2015) Trichoderma reesei XYN5, the flawed sibling of XYN1.
  19. Ramoni J, Herold S, Marchetti-Deschmann M, et al. (2015) Xylanase XYN V from Trichoderma reesei.
  20. Marchetti-Deschmann M (2015) Mass Spectrometry Imaging - Visualizing Molecular Distributions On Tissue and Biomaterial.
  21. Reitschmidt S, Zeratto S, Hartmanová L, et al. (2015) Studying fungal proteome and surface changes during host-pathogen interaction.
  22. Nemes A, Reitschmidt S, Hartmanová L, et al. (2015) From Proteomics to Mass Spectrometry Imaging – The Study of Mycoparasitic Interactions.
  23. Denk C (2015) Radiolabeled 1,2,4,5-Tetrazines: Tools for Bioorthogonal PET Imaging. 2nd Göttingen SPIRIT “Summer” Sch. “Multimodal Imaging from high Resolut. Vitr. Towar. vivo imaging”
  24. Denk C, Duffy M, Hermann S, et al. (2015) Radioiodinated 1,2,4,5-Tetrazine (Radio)Synthesis and in vivo Evaluation for Therapeutic Pretargeting. World Mol. Imaging Congr. 2015
  25. Nemes A, Reitschmidt S, Hartmanová L, et al. (2015) From Proteomics to Mass Spectrometry Imaging – The Study of Mycoparasitic Interactions.
  26. Denk C, Mairinger S, Stanek J, et al. (2015) Development and Evaluation of a small [11C]-Tetrazine as bioorthogonal PET Probe. World Mol. Imaging Congr. 2015
  27. Fröhlich SM, Allmaier G, Marchetti-Deschmann M (2015) The Influence Of Sample Type And Preparation On MALDI-Tof Mass Spectrometry Imaging. 

      2016

  1. Ramoni J, Seidl-Seiboth V, Bischof R, Seiboth B (2016) Gene Expression Systems in Industrial Fungi: Advancements and Applications. 
  2. Svatunek D, Denk C, Wilkovitsch M, et al. (2016) 18F labeled azidoglucose derivatives as “click” agents for pretargeted PET imaging. Austrian Carbohydrate Workshop 2016, 11-12.02.2016, BOKU Vienna